BiomedSQL: A Biomedical Reasoning Benchmark

DanielKhashabi · x · 2026-07-09

BiomedSQL is a Text-to-SQL evaluation suite designed for biomedical knowledge bases, aimed at assessing scientific reasoning and biomedical discovery systems. It covers questions requiring implicit scientific common sense, such as statistical thresholds, effect directions, and drug approval statuses.

The post provides links to the preprint and dataset, noting the collaborative effort behind the work. Its core value lies in offering a more systematic evaluation benchmark for biomedical reasoning systems.

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