Mol-JEPA: Molecular Foundation Model Learns from 14 Modalities Simultaneously

rbhar90 · x · 2026-08-26

Boehringer Ingelheim and collaborators released Mol-JEPA, a molecular foundation model using a multimodal Joint Embedding Predictive Architecture. It learns from 14 modalities including structure, cell painting, binding affinity, ADMET, and quantum chemistry. By using modality masking and a SIGReg regularizer to prevent representation collapse, Mol-JEPA addresses the underfitting issues of single-view models. It shows significant Out-of-Distribution (OOD) gains on small ADME datasets, according to the paper on arXiv.

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